Publications
Carbapenemase-producing Enterobacterales Causing Secondary Infections During the COVID-19 Crisis at a New York City Hospital
Gomez-Simmonds A, Annavajhala MK, McConville TH, Dietz DE, Shoucri SM, Laracy JC, Rozenberg FD, Nelson B, Greendyke WG, Furuya EY, Whittier S, Uhlemann AC. J Antimicrob Chemother. 2021 Jan 19;76(2):380-384. doi: 10.1093/jac/dkaa466. PMID: 33202023 Free PMC article.
CrrB Positively Regulates High-Level Polymyxin Resistance and Virulence in Klebsiella pneumoniae
McConville TH, Annavajhala MK, Giddins MJ, Macesic N, Herrera CM, Rozenberg FD, Bhushan GL, Ahn D, Mancia F, Trent MS, Uhlemann AC. Cell Reports. 2020 Oct 27;33(4):108313. doi: 10.1016/j.celrep.2020.108313. PMID: 33113377 Free PMC article.
Evolution of the Environmental Microbiota of a New Neonatal Intensive Care Unit (NICU) and Implications for Infection Prevention and Control
Zachariah P, Rozenberg FD, Stump S, Moscoso DI, Krishnamurthy G, Saiman L, Uhlemann AC, Freedberg DE. Infect Control Hosp Epidemiol. 2020 Aug 28:1-6. doi: 10.1017/ice.2020.396. Online ahead of print. PMID: 32856577
Predicting Phenotypic Polymyxin Resistance in Klebsiella pneumoniae through Machine Learning Analysis of Genomic Data
Macesic N, Bear Don't Walk OJ IV, Pe'er I, Tatonetti NP, Peleg AY, Uhlemann AC. mSystems. 2020 May 26;5(3):e00656-19. doi: 10.1128/mSystems.00656-19. PMID: 32457240 Free PMC article.
Pseudomonas aeruginosa Utilizes Host-Derived Itaconate to Redirect Its Metabolism to Promote Biofilm Formation
Riquelme SA, Liimatta K, Wong Fok Lung T, Fields B, Ahn D, Chen D, Lozano C, Sáenz Y, Uhlemann AC, Kahl BC, Britto CJ, DiMango E, Prince A. Cell Metabolism. 2020 Jun 2;31(6):1091-1106.e6. doi: 10.1016/j.cmet.2020.04.017. Epub 2020 May 18. PMID: 32428444
Transfusional Iron Overload and Intravenous Iron Infusions Modify the Mouse Gut Microbiota Similarly to Dietary Iron
La Carpia F, Wojczyk BS, Annavajhala MK, Rebbaa A, Culp-Hill R, D'Alessandro A, Freedberg DE, Uhlemann AC, Hod EA. NPJ Biofilms Microbiomes. 2019 Sep 24;5(1):26. doi: 10.1038/s41522-019-0097-2. eCollection 2019. PMID: 31583109.
Multidrug-Resistant Klebsiella pneumoniae ST307 in Traveler Returning from Puerto Rico to Dominican Republic
Rojas R, Macesic N, Tolari G, Guzman A, Uhlemann AC. Emerg Infect Dis. 2019 Aug;25(8):1583-1585. doi: 10.3201/eid2508.171730. PMID: 31310203 Free PMC article.
Escherichia coli Harboring mcr-1 in a Cluster of Liver Transplant Recipients: Detection through Active Surveillance and Whole-Genome Sequencing
Macesic N, Khan S, Giddins MJ, Freedberg DE, Whittier S, Green DA, Furuya EY, Verna EC, Annavajhala MK, Gomez-Simmonds A, Uhlemann AC. Antimicrob Agents Chemother. 2019 May 24;63(6):e02680-18. doi: 10.1128/AAC.02680-18. Print 2019 Jun. PMID: 30962343 Free PMC article.
Multidrug-Resistant Enterobacter cloacae Complex Emerging as a Global, Diversifying Threat
Annavajhala MK, Gomez-Simmonds A, Uhlemann AC. Front Microbiol. 2019 Jan 31;10:44. doi: 10.3389/fmicb.2019.00044. eCollection 2019. PMID: 30766518 Free PMC article.
BacCapSeq: a Platform for Diagnosis and Characterization of Bacterial Infections
Allicock OM, Guo C, Uhlemann AC, Whittier S, Chauhan LV, Garcia J, Price A, Morse SS, Mishra N, Briese T, Lipkin WI. mBio. 2018 Oct 23;9(5):e02007-18. doi: 10.1128/mBio.02007-18. PMID: 30352937 Free PMC article.
Carbapenem-resistant Enterobacteriaceae Colonization (CRE) and Subsequent Risk of Infection and 90-day Mortality in Critically Ill Patients, an Observational Study
McConville TH, Sullivan SB, Gomez-Simmonds A, Whittier S, Uhlemann AC. PLoS One. 2017 Oct 12;12(10):e0186195. doi: 10.1371/journal.pone.0186195. eCollection 2017. PMID: 29023567 Free PMC article.
Detection of mcr-1-Carrying Escherichia coli Causing Bloodstream Infection in a New York City Hospital: Avian Origins, Human Concerns?
Macesic N, Green D, Wang Z, Sullivan SB, Shim K, Park S, Whittier S, Furuya EY, Gomez-Simmonds A, Uhlemann AC. Open Forum Infect Dis. 2017 May 20;4(3):ofx115. doi: 10.1093/ofid/ofx115. eCollection 2017 Summer. PMID: 28721352 Free PMC article.
Multicenter Clinical and Molecular Epidemiological Analysis of Bacteremia Due to Carbapenem-Resistant Enterobacteriaceae (CRE) in the CRE Epicenter of the United States
Satlin MJ, Chen L, Patel G, Gomez-Simmonds A, Weston G, Kim AC, Seo SK, Rosenthal ME, Sperber SJ, Jenkins SG, Hamula CL, Uhlemann AC, Levi MH, Fries BC, Tang YW, Juretschko S, Rojtman AD, Hong T, Mathema B, Jacobs MR, Walsh TJ, Bonomo RA, Kreiswirth BN. Antimicrob Agents Chemother. 2017 Mar 24;61(4):e02349-16. doi: 10.1128/AAC.02349-16. Print 2017 Apr.PMID: 28167547 Free PMC article.
Evidence From a New York City Hospital of Rising Incidence of Genetically Diverse Carbapenem-resistant Enterobacter cloacae and Dominance of ST171, 2007-14
Gomez-Simmonds A, Hu Y, Sullivan SB, Wang Z, Whittier S, Uhlemann AC. J Antimicrob Chemother. 2016 Aug;71(8):2351-3. doi: 10.1093/jac/dkw132. Epub 2016 Apr 26. PMID: 27118776.